genomic data

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Archive for genomic data

Monthly Genetic Evaluations to Boost Top-Rated Canadian Dairy Cow Rankings in 2025

Friday, July 12th, 2024

Uncover the potential of Lactanet’s 2025 monthly genetic evaluations to elevate your Canadian dairy cows to premier status. Are your herds positioned to gain from this groundbreaking update? Learn more today.

A pillar of the dairy sector, genetic assessments are essential for herd management, breeding choices, and production. These tests concentrate on important factors like milk output, health, and fertility, thus empowering breeders and farmers to propel operational effectiveness and genetic advancement. Early 2025 will see Lactanet, Canada’s national dairy statistics and genetic improvement agency, moving to monthly official assessments for Canadian cows. This shift is significant for herds where milk samples are gathered unsupervised by the herd owner as it might improve more dairy cows to a top-rated level in genetic rankings. The change fits business trends toward automation, improved data-collecting techniques, and expands the genetic basis accessible to breeders.

Driving Genetic Progress: How Lactanet Canada Shapes the Future of Dairy Herds

Crucially, lactate is the pillar of genetic development in Canada. The company provides complete dairy herd management solutions comprising milk records, genetic assessments, and advising services to boost dairy output and genetic enhancement.

Using solid data collecting and thorough analysis, Lactanet stimulates developments that support the national dairy industry’s sustainability and output. Three times a year, in April, August, and December, genetic assessments and bull proofs guarantee great precision and dependability. These tests provide essential benchmarks, including production characteristics, Lifetime Production Index (LPI), and Pro$, thus helping breeders choose the most genetically outstanding animals.

The way Lactanet combined genomic data emphasizes its dedication to genetic improvement. Lactanet accurately assesses the genetic potential of dairy cattle by using sophisticated genotyping, enabling breeders to make educated choices promoting long-term genetic improvement.

Lactanet guarantees the genetic quality of Canadian dairy cattle by matching modern genetic research with pragmatic on-farm data collecting, therefore advancing the sector.

Unveiling Hidden Potentials: Addressing the Genetic Evaluation Gaps in Owner-Sampled Herds

Even with improvements in genetic assessments, the existing method offers challenges—especially for owner-sampled herds. These cows are deprived of gaining places on top-ranking lists like the Lifetime Production Index or Pro$ depending on Parent Average (PA) values instead of exact genetic parameters from supervised testing. These cows typically stay underestimated in formal genetic evaluations without controlled testing data.

The triannual updates postpone the distribution of vital genetic information and further limit the acknowledgment of gene progress within owner-sampled herds. This lag narrows the breeding base, affecting individual breeders and limiting general genetic progress.

The introduction of automated milking systems with built-in sample features emphasizes the increasing discrepancy between contemporary herd management techniques and conventional genetic assessment approaches. In the present configuration, these systems generate large amounts of data that only partially support genetic assessments, developing a discrepancy between actual and evaluated genetic value.

To solve these problems and guarantee that every cow has fair access to top-ranking lists independent of milk testing control, the suggested change to monthly official assessments aims to This modification seeks to drive more successful breeding strategies by offering a more comprehensive and accurate picture of genetic quality in Canadian dairy herds.

Proposed Monthly Genetic Evaluations: A Game Changer for Owner-Sampled Dairy Herds

The suggested adjustments will greatly help owner-sampled herds, including switching to a monthly genetic evaluation scheme. The first Tuesday of every month will be used to update genetic assessments for cows with fresh test results, including unsupervised samples. Official updates for proven sires will come three times a year; owner-sampled herds will frequently have their Parent Average (PA) values updated. This shift increases the genetic pool accessible to breeders by allowing these herds to have maybe cows included in top-ranking genetic lists.

Through monthly updates, Lactanet recognizes the growth in automated milking systems, which gather production data and conduct thorough sampling. This renders either supervised or unsupervised categorization less critical. The obtained data still shows excellent accuracy. Hence, genomics guarantees solid genetic assessments. This change toward regular and comprehensive updates seeks to optimize genetic advancement and enhance the genetic health of dairy cows throughout Canada.

Lactanet’s genetic assessment procedure revolves mainly around integrating genomics, the fundamental component of all genetic ranking systems used in Canada. The company uses a diverse strategy to guarantee the quality and completeness of the published genetic data. Newly collected data from bulls and females undergoing controlled testing is continuously included in the current dataset, updating the “unofficial” genetic assessments. Participating artificial insemination (AI) businesses and farmers using modern herd management systems like Compass and DairyComp may obtain these unofficial assessments.

Implications for Breeders: Expanding the Genetic Horizon with Monthly Evaluations

This change has significant ramifications for breeders. Monthly certified genetic evaluations will increase the genetic data accessible to breeders, enabling assessments based on actual performance rather than Parent Average values. This will increase the genetic pool from which sires and dams could be chosen. Frequent updates will ensure breeders receive the most recent genetic information, guiding their breeding choices. This precision will enable the identification of previously missed outstanding cows. More cows will land top-rated in genetic rankings.

Including information from automated milking systems and other cutting-edge technology will also help to guarantee ratings reflect actual performance. This will enable breeders to propel genetic advancement efficiently, improving dairy herd sustainability, health, and production throughout Canada.

Precision and Reliability: Lactanet’s Multifaceted Genetic Evaluation Process

Using a thorough internal procedure, Lactanet guarantees accuracy and dependability in genetic assessments. This generates unofficial and formal genetic evaluations by combining data from known sires with supervised testing females. Shared via Compass and DairyComp, unofficial assessments provide vital information for temporary herd sire decisions.

Underlying all genetic rankings, Lactanet’s work is based on the integration of genomes. Genomic testing lowers the uncertainty related to conventional techniques by improving assessments’ accuracy and prediction ability.

Considered equally accurate are both controlled and unsupervised milk sample data. The emergence of automated technologies has improved sample integrity and milk production monitoring. Lactanet’s data analytics technologies tightly evaluate these inputs and match them with genetic data to provide high-precision assessments.

Combining conventional data collection, cutting-edge genomics, and strict validation techniques, Lactanet’s genetic assessment system is a diverse strategy that improves assessment accuracy. It increases the genetic basis accessible to breeders, promoting the ongoing development of Canadian dairy herds.

Technological Advancements: The Role of Automated Milking Systems in Modern Dairy Farming

Using automated milking systems signifies a significant change in dairy production, improving output and efficiency. These sophisticated technologies have reduced the need for supervised milk testing by including exact sampling and production monitoring features. Automated milking guarantees reliable data collecting necessary for genetic studies and fits with Lactanet’s shift to unsupervised testing, simplifying the procedure. This change enables significant genetic advancement and improves the quality of Canadian dairy herds by allowing cows to be included more broadly in genetic rankings.

Genomics and Unsupervised Testing: A New Era of Equitable Genetic Evaluations

Brian Van Doormaal highlighted the significance of these changes, noting, “For genetic evaluation, top lists usually involve genotyped females, so there’s little need to distinguish between supervised and unsupervised testing. The data accuracy is equivalent, and genomics ensures high genetic information accuracy.”

Mapping the Road Ahead: Key Milestones for Implementing Lactanet’s New Genetic Evaluation System

As Lactanet gears up for its new monthly evaluation system, several pivotal milestones guide its implementation:

Early 2024: Finalize criteria for cow eligibility through stakeholder consultations and in-depth analysis.
Mid to Late 2024: Conduct pilot runs and gather feedback to refine the evaluation process.
January 2025: Begin initial rollout, integrating the new system with existing triannual updates.
May 2025: Achieve full implementation, ensuring monthly updates for all owner-sampled herds.

This carefully structured timeline guarantees thorough preparation and testing, allowing Lactanet to maintain its commitment to accuracy and reliability.

The Bottom Line

Changing from Lactanet to monthly genetic tests might revolutionize the Canadian dairy sector. It levels the playing field for owner-sampled herds so they may reach high genetic rankings alongside monitored herds, hence increasing the genetic pool available for breeders. This action also fits the growing usage of automated milking systems, which combine cutting-edge dairy farming technology. Dairy cow rankings will become more dynamic and accurate, defining new national genetic advancement and herd development criteria.

Key Takeaways:

Monthly official evaluations will provide more timely and comprehensive genetic data for Canadian cows.
Owner-sampled herds, previously limited to Parent Average values, will now have their genetic evaluations updated monthly.
This change is expected to expand the genetic base available to breeders, allowing more cows to achieve top rankings.
Proven sires’ evaluations will continue to be updated three times annually, maintaining the reliability of genetic data.
The transition aligns with the rising trend of automated milking systems, which offer unsupervised sampling and monitoring capabilities.
Genomics remain fundamental to genetic rankings, ensuring accuracy across both supervised and unsupervised testing environments.
Lactanet is yet to finalize criteria for eligibility, with implementation set for early or mid-2025.

Summary:

Lactanet Canada, Canada’s national dairy statistics and genetic improvement agency, is set to transition to monthly official assessments for Canadian cows in early 2025. This change is particularly significant for herds where milk samples are collected unsupervised by the herd owner, as it could improve more dairy cows to a top-rated level in genetic rankings. Lactanet provides complete dairy herd management solutions, including milk records, genetic assessments, and advisory services to boost dairy output and genetic enhancement. The proposed change aims to drive more successful breeding strategies by offering a more comprehensive and accurate picture of genetic quality in Canadian dairy herds. The company’s genetic assessment procedure focuses on integrating genomics, the fundamental component of all genetic ranking systems used in Canada. Monthly certified genetic evaluations will increase the genetic data accessible to breeders, enabling assessments based on actual performance rather than Parent Average values. Frequent updates will ensure breeders receive the most recent genetic information, guiding their breeding choices.

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Categories : Management

Understanding Conformation and PTAT: Key Differences in Dairy Cattle Genetic Evaluations in Canada and the USA

Monday, July 1st, 2024

Uncover the critical variations in dairy cattle genetic assessments for conformation and PTAT between Canada and the USA. What implications do these standards hold for breeding practices?

For breeders aiming to produce the next World Dairy Expo Champion or an EX-97 cow, utilizing the American PTAT or the Canadian Conformation index is not just an option—they are essential tools in your breeding arsenal. While both PTAT and Conformation indices are invaluable, they are not interchangeable. This article will explore the distinctions between Canadian and American genetic evaluations for conformation and PTAT, shedding light on how each system functions and what sets them apart.

The Evolution of Genetic Evaluation Systems in Dairy Cattle: A Tale of Two Nations

The historical trajectory of genetic evaluation systems in dairy cattle within Canada and the USA signifies an evolution of both countries’ dairy industries. Originally hinging on fundamental pedigree analysis, these systems have dramatically advanced with cutting-edge genetic technology and data analytics. Canada launched its first formal genetic evaluation for dairy cattle in the mid-20th century, focusing on production traits. By the 1970s, Canadian dairy scientists incorporated type traits, utilizing linear classification systems to quantify conformation characteristics. This method allowed breeders to objectively evaluate and select superior dairy cattle based on body and udder traits.

In parallel, the USA advanced from essential herd records to sophisticated evaluations, incorporating production and type traits by the 1980s. A key milestone was the establishment of Predicted Transmitting Ability (PTAT), revolutionizing how type traits were genetically assessed. PTAT provided a standardized measure allowing breeders to predict genetic merit regarding conformation, facilitating more informed breeding decisions.

The 1990s and early 2000s marked a crucial phase with genomic evaluations. Canada and the USA swiftly integrated genomic data, increasing accuracy and efficiency. Genomic selection enabled early identification of desirable traits, accelerating genetic progress and enhancing herd quality. Collaborative efforts between Canadian and American dairy geneticists have recently refined methodologies, incorporating advanced statistical models and extensive phenotype databases.

Today, the genetic evaluation systems in both nations reflect a blend of historical advancements and modern innovations. Conformation and PTAT assessments are entrenched in a framework valuing genetic merit for production, longevity, health, and robustness, ensuring dairy cattle improvement remains responsive to the industry’s evolving demands.

Dairy Cattle Conformation in Canada: An Intricate Evaluation Framework

Genetic evaluations for dairy cattle conformation in Canada meticulously examine a comprehensive set of traits. Key characteristics like stature, chest width, body depth, angularity, rump angle, and leg traits are assessed to ensure aesthetic appeal and functional efficiency, particularly for durability and productivity.

Mammary system traits, including udder depth, teat length, and placement, are critical for milking efficiency and udder health. Feet and leg conformation, which is vital for mobility and longevity, is also evaluated.

In Canada, conformation blends individual traits like udder attachment and teat placement into a single index. Each trait is scored meticulously, providing a detailed evaluation of an animal’s overall conformation. This approach helps breeders make informed decisions, improving dairy cattle’s genetic quality and functional efficiency. Integrating these traits into one index highlights the importance of a balanced dairy cow. Traits such as udder conformation, feet, leg health, and overall robustness work together to enhance performance and longevity in a herd.

The Canadian Dairy Network (CDN) spearheads this complex evaluation process. Utilizing advanced genetic methodologies, the CDN integrates phenotypic data with genetic models to offer accurate breeding values. This scientific approach strengthens the genetic quality of the Canadian dairy herd.

Supporting organizations, such as Lactanet and Holstein Canada, play crucial roles. Lactanet provides comprehensive herd management services, including conformation assessments. Holstein Canada sets standards and trains classifiers for consistent on-farm evaluations. These organizations form a network dedicated to enhancing the genetic standards of dairy cattle through diligent conformation evaluations, supporting breeders in informed selection decisions, and maintaining Canada’s reputation for producing world-class dairy cattle.

PTAT and Comprehensive Type Evaluation in the United States: A Framework for Genetic Excellence

In the United States, dairy cattle conformation evaluation hinges on the Predicted Transmitting Ability for Type (PTAT) and a detailed type evaluation system. Unlike Canada, where conformation is a composite index of individual traits, PTAT in the United States is calculated based on the final classification score about herd mates. PTAT assesses an animal’s genetic potential to pass on type traits to its offspring, focusing on various aspects of physical structure, such as stature, body depth, and udder conformation. Critical traits include:

Stature: The height of the animal at the shoulders and hips.
Udder Depth: The distance from the udder floor to the hock affects milk production efficiency.
Body Depth: The depth of the ribcage, indicating overall body capacity.
Foot Angle: The angle and structure of the foot influence mobility and longevity.
Rear Leg Side View: The curvature of the rear legs when viewed from the side.

These traits are meticulously recorded and analyzed for a robust genetic evaluation. Under the USDA, the Council on Dairy Cattle Breeding (CDCB) leads the effort in collecting, analyzing, and sharing genetic and genomic evaluations. Their extensive nationwide database, sourced from dairy farms, provides comprehensive genetic insights.

Breed-specific organizations like the Holstein Association USA and the American Jersey Cattle Association (AJCA) refine evaluations for specific breeds. They collaborate with the CDCB to ensure accurate and relevant assessments, offer educational resources to breeders, and promote best practices in genetic selection. This collaborative framework ensures that U.S. dairy farmers have access to cutting-edge genetic information, enhancing the genetic merit of dairy herds and advancing dairy cattle breeding nationwide.

Unified Yet Diverse: Genetic Indices Shaping Dairy Excellence in North America

For decades, significant efforts have been undertaken to harmonize the evaluation of type traits and the classification programs generating the requisite data for genetic evaluations on an international scale. While substantial progress has been achieved, occasional surprises still emerge. These unforeseen developments typically pertain not to production traits but to type and management traits.

In Canada, Conformation is quantified on a scale where each standard deviation equals five points. Conversely, the United States expresses PTAT in standard deviations. Consequently, a confirmation score of 5 in Canada generally corresponds to a PTAT score of 1 in the U.S. However, assuming a direct equivalence between a PTAT of 1 and a Conformation score of 5 can be misleading. Lactanet in Canada recently conducted an extensive study comparing over 4,000 bulls with daughters and genetic proofs in both countries to elucidate this. The correlation between the TPI and LPI was notably high at 0.93.
Interestingly, the correlation between Canada’s Pro$ and the TPI was even higher, reaching 0.95. As anticipated, production traits demonstrated strong correlations, with Milk at 0.93, Fat at 0.97, and Protein at 0.95, given that production can be measured objectively. However, the variations were more pronounced when evaluating the type of health and management traits.

Type Indexes

The correlation between PTAT in the United States and Conformation in Canada is 0.76. In the United States, the direct contribution of type to the Total Performance Index (TPI) emerges from three primary sources: the PTAT (8%), the udder composite (11%), and the feet & leg composite (6%). In Canada, these components are called Conformation, Mammary System, and Feet & Legs, respectively. A crucial point to understand is that these are composite indices composed of various individual traits within each category, and each nation applies a distinctive formula to weight these traits. Consequently, the differing weightings lead to modestly lower correlations for udders (0.80) and feet & legs (0.65). It’s also essential to recognize that both composites are adjusted in each country to be independent of stature. This adjustment allows for the specific selection of udder or leg improvements without inadvertently promoting increased stature.

Mammary System

Among the mammary system traits, evaluations of Udder Depth (0.95), Teat Length (0.94), Rear Teat Placement (0.90), Fore Teat Placement (0.87), and Fore Attachment (0.93) exhibit remarkable consistency between Canada and the United States. Nevertheless, a divergent perspective emerges with Median Suspensory (0.73), Rear Udder Height (0.78), and Rear Udder Width (0.66), which display significantly lower correlations. This disparity suggests that traits such as rear udder height, rear udder width, and suspensory ligament are appraised with varying degrees of emphasis and interpretation in each country.

Feet and Legs

Feet and legs exhibit a moderate correlation of 0.65 between Canada and the United States. Examining specific traits within this category, the rear leg side view reveals a high correlation of 0.91, indicating substantial similarity between the countries. However, the rear leg rear view (0.76) and foot angle (0.73) diverge more significantly. A noteworthy distinction lies in the traits recorded: while foot angle is commonly observed globally, Canada also measures heel depth. The rationale behind this difference stems from the susceptibility of foot angle to recent hoof trimming, a variable that does not affect heel depth.

The overarching objective of selecting for superior feet and legs is to mitigate lameness and enhance longevity. In Canada, the mammary system exhibits a 0.25 correlation with herd life, slightly higher than the composite feet and legs score of 0.22. Yet, individual traits within this composite tell a different story. Foot angle shows a negative correlation with longevity at -0.16, whereas heel depth, boasting a positive correlation of +0.20, stands out prominently. This raises a pertinent question: why is heel depth not universally recorded over foot angle?

Further analysis of specific traits reveals minimal impact on longevity. The rear leg side view holds a correlation of -0.08, the rear leg rear view is 0.03, locomotion is 0.05, and bone quality is a mere -0.01. Given these negligible impacts, particularly bone quality in its current linear measurement, it might be worth exploring its assessment as a medial optimum trait, balancing frailty and coarseness.

Additionally, Canada uniquely records front legs, correlating with her life at 0.18, second only to heel depth. In the broader context of overall frame traits, stature maintains a high concordance at 0.97 between both countries. In contrast, body depth (0.71) and chest width (expressed as strength in US evaluations, 0.69) have lower correlations, highlighting regional differences in evaluation emphasis.

The Bottom Line

Examining genetic evaluations for dairy cattle conformation and type in Canada and the USA reveals distinctive approaches and converging goals, underlining the importance of tailored yet comprehensive systems. We’ve explored the evolution of genetic frameworks in both nations, highlighting Canada’s detailed evaluations and the USA’s focus on PTAT and holistic type assessment. From composite traits to specific evaluations of mammary systems and feet and legs, each country aims to boost genetic excellence in dairy cattle.

As these systems continue to adapt to scientific advancements and industry needs, the goal remains to develop a robust, genetically superior dairy cattle population capable of thriving in diverse environments. This endeavor highlights the critical intersection of genetic science, industry priorities, and animal welfare, shaping the future of dairy cattle breeding. While methods may differ, the objective is shared: achieving dairy excellence through rigorous and innovative genetic evaluations that benefit producers, consumers, and cattle. Collaborations and continual improvements ensure North America stays at the forefront of dairy cattle genetics, leading global dairy production.